| Value | |
|---|---|
| echo | FALSE |
| inputData | ReportOutput/ReadDataOutput.RData |
| filterMean | 30 |
| filterPrevalence_Proportion | 0 |
| filterPrevalence_Expression | 0 |
| filterIQR | 0 |
| output | GeneFilterOutput.RData |
A multitude of filter criteria are applied to the gene expression data. Here we summarise the filter results of individual filters and the final result.
| RemovedMean | RemovedIQR | RemovedPrevalence | Removed |
|---|---|---|---|
| 6155 | 0 | 0 | 6155 |
Removed (mean): 6155 (35.52%)
Removed (IQR): 0 (0.00%)
Removed (Prevalence): 0 (0.00%)
Filtered total: 6155 (35.52%)
Remaining genes: 11173
You may want to change some options based on the current filtering results to tweak the filter cutoff values. These filter plots may help with setting the right filter options.
Filter by normalized mean expression.
Require that Mean expression > params$filterMean).
Filter by inter-quartile range. I.e. the difference between the 25th and 75th percentile.
Filter by **IQR > params$filterIQR.
Plot coming soon-ish.